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In this case study, we demonstrate automated workflows using Medicinal Genomics (MGC) assays specifically developed for cannabis testing. The SenSATIVAx Plant/Microbial DNA Purification Kit provides fast, easy isolation of plant and microbial DNA from freshly cut or cured leaf or flower material without the need for organic extraction, and can be used to prepare samples for use with the PathoSEEK and FemINDICAtor assays. The PathoSEEK Microbial Safety Testing Platform uses a quantitative polymerase chain reaction to search for and quantify the unique DNA sequences of target organisms in cannabis flower, extracts and infused product samples, and includes an internal cannabis control.